STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cyoDCytochrome O ubiquinol oxidase subunit IV. (113 aa)    
Predicted Functional Partners:
cyoA
Ubiquinol oxidase polypeptide II; Start codon not provided.
 
 0.999
cyoB
Ubiquinol oxidase polypeptide I; Belongs to the heme-copper respiratory oxidase family.
 
 0.999
cyoC
Cytochrome O ubiquinol oxidase subunit III.
 
 0.999
cyoE
Protoheme IX farnesyltransferase (heme O synthase); Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
 
 0.993
sdhB
Succinate dehydrogenase iron-sulfur protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
   
 
 0.673
sdhC
Succinate dehydrogenase cytochrome b-556 subunit.
   
 
 0.667
sdhA
Succinate dehydrogenase flavoprotein subunit; Start codon not provided; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
   
 
  0.580
cydA1
Cytochrome D ubiquinol oxidase subunit I; Start codon not provided; Also similar to BAV3111 (54.6 38d.).
     
 0.579
BAV2786
Putative cytochrome bd ubiquinol oxidase,subunit I.
     
 0.579
cydA2
Cytochrome D ubiquinol oxidase subunit I; Also similar to BAV0991 (54.6 38d.).
     
 0.579
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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