STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV0788Conserved hypothetical protein. (320 aa)    
Predicted Functional Partners:
fhaD
Fimbrial chaperone protein.
   
    0.826
fimD
Fimbrial adhesin.
   
    0.698
fimC
Outer membrane fimbrial usher protein; Start codon not provided.
   
    0.698
lpfC
Putative fimbrial usher; Start codon not provided.
   
    0.587
lpfB
Fimbrial chaperone.
   
    0.535
pheA
P-protein [includes: chorismate mutase and prephenate dehydratase].
  
  
 0.490
BAV0782
Two component system sensor kinase.
   
  
 0.412
arnT
Putative 4-amino-4-deoxy-l-arabinose lipid A transferase.
     
 0.401
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.