STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV0855Putative lytic transglycosylase. (274 aa)    
Predicted Functional Partners:
BAV2759
Putative thioredoxin.
  
 
   0.739
BAV2282
Putative membrane protein.
  
     0.701
ubiD
3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis.
       0.675
BAV2409
Putative membrane protein; Start codon not provided.
  
    0.656
BAV1041
Outer membrane porin protein.
  
     0.640
BAV3360
Conserved hypothetical protein.
  
     0.623
BAV2669
Putative exported protein.
  
   
 0.598
slt
Soluble lytic murein transglycosylase precursor.
 
   
 0.596
BAV2156
Putative exported protein.
  
     0.585
phaP
Granule-associated protein (phasin).
  
     0.581
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.