STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV0860Putative lipid acyl hydrolase. (399 aa)    
Predicted Functional Partners:
BAV0861
Putative ribonuclease inhibitor.
       0.841
maeB1
NADP-dependent malic enzyme.
       0.811
BAV1541
Putative competence protein.
     
 0.584
BAV3192
Putative cytochrome C; Truncated at N-terminus relative its orthologue in B. bronchiseptica.
  
     0.512
BAV0858
Hypothetical protein; No significant database matches. Seems to be unique to Bordetellae.
       0.489
BAV2027
Conserved hypothetical protein.
  
     0.453
rseB
sigma-E factor regulatory protein.
  
     0.428
BAV2994
Putative membrane protein.
  
     0.423
BAV2028
Conserved hypothetical protein.
  
     0.401
surA
Survival protein (peptidyl-prolyl cis-trans isomerase); Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation.
      
 0.400
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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