STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV0860Putative lipid acyl hydrolase. (399 aa)    
Predicted Functional Partners:
BAV0861
Putative ribonuclease inhibitor.
       0.844
maeB1
NADP-dependent malic enzyme.
       0.810
BAV1541
Putative competence protein.
     
 0.615
BAV3192
Putative cytochrome C; Truncated at N-terminus relative its orthologue in B. bronchiseptica.
  
     0.512
BAV0858
Hypothetical protein; No significant database matches. Seems to be unique to Bordetellae.
       0.489
BAV2027
Conserved hypothetical protein.
  
     0.453
nadE
Glutamine-dependent NAD synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
    0.432
rseB
sigma-E factor regulatory protein.
  
     0.428
BAV2994
Putative membrane protein.
  
     0.423
BAV2028
Conserved hypothetical protein.
  
     0.401
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.