STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV0861Putative ribonuclease inhibitor. (154 aa)    
Predicted Functional Partners:
BAV0860
Putative lipid acyl hydrolase.
       0.844
maeB1
NADP-dependent malic enzyme.
       0.811
BAV0540
Putative membrane protein; No significant database matches. Seems to be unique to the Bordetellae.
  
     0.772
BAV0691
Putative membrane protein.
  
     0.771
BAV2290
Putative pilus assembly protein; No significant database matches.
  
     0.769
BAV3116
Putative exported protein.
  
     0.768
BAV0851
Putative membrane protein.
  
    0.766
rseA
sigma-E factor negative regulatory protein.
  
     0.755
BAV1041
Outer membrane porin protein.
  
     0.754
BAV2282
Putative membrane protein.
  
    0.747
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.