STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV0866Putative sulfate transporter. (561 aa)    
Predicted Functional Partners:
petB
Cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
    
 
 0.676
BAV2004
Putative exonuclease.
  
   0.626
nuoM
NADH dehydrogenase I chain M.
  
 
 0.621
BAV1818
Ankyrin repeat-containing exported protein.
  
 
 
 0.588
BAV0444
Ankyrin repeat-containing exported protein.
  
 
 
 0.574
BAV1767
Ankyrin repeat-containing exported protein.
  
 
 
 0.573
pgk
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
       0.539
dnt
Dermonecrotic toxin.
    
 
 0.514
phaAB
K(+)/H(+) antiporter subunit A/B (pH adaptation potassium efflux system protein A/B).
  
  
 0.511
tktA
Transketolase 1; Belongs to the transketolase family.
  
  
 0.451
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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