pitA protein (Bordetella avium) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

pitA

Low-affinity inorganic phosphate transporter. (491 aa)

Predicted Functional Partners:

cysG

0.669

mogA

0.539

gltB

0.493

pstB

0.478

lysS

0.477

wlbJK

0.467

BAV3119

0.467

BAV1904

0.459

glyQ

0.450

BAV0880

0.449

Your Current Organism:

Bordetella avium

NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAV0880	mogA	BAV0880	BAV0878	Putative exported peptidase; Start codon not provided.	Molybdopterin biosynthesis protein.	0.607
BAV0880	pitA	BAV0880	BAV0877	Putative exported peptidase; Start codon not provided.	Low-affinity inorganic phosphate transporter.	0.449
BAV0880	wlbJK	BAV0880	BAV0091	Putative exported peptidase; Start codon not provided.	Putative membrane protein.	0.423
BAV1904	BAV3119	BAV1904	BAV3119	Conserved hypothetical protein.	Putative heat shock protein.	0.538
BAV1904	pitA	BAV1904	BAV0877	Conserved hypothetical protein.	Low-affinity inorganic phosphate transporter.	0.459
BAV3119	BAV1904	BAV3119	BAV1904	Putative heat shock protein.	Conserved hypothetical protein.	0.538
BAV3119	pitA	BAV3119	BAV0877	Putative heat shock protein.	Low-affinity inorganic phosphate transporter.	0.467
BAV3119	wlbJK	BAV3119	BAV0091	Putative heat shock protein.	Putative membrane protein.	0.565
cysG	gltB	BAV0848	BAV3291	Siroheme synthase includes: uroporphyrin-iii c-methyltransferase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme.	Glutamate synthase [NADPH] large chain precursor.	0.530
cysG	pitA	BAV0848	BAV0877	Siroheme synthase includes: uroporphyrin-iii c-methyltransferase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme.	Low-affinity inorganic phosphate transporter.	0.669
cysG	wlbJK	BAV0848	BAV0091	Siroheme synthase includes: uroporphyrin-iii c-methyltransferase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme.	Putative membrane protein.	0.618
gltB	cysG	BAV3291	BAV0848	Glutamate synthase [NADPH] large chain precursor.	Siroheme synthase includes: uroporphyrin-iii c-methyltransferase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme.	0.530
gltB	pitA	BAV3291	BAV0877	Glutamate synthase [NADPH] large chain precursor.	Low-affinity inorganic phosphate transporter.	0.493
gltB	pstB	BAV3291	BAV0942	Glutamate synthase [NADPH] large chain precursor.	Phosphate ABC transporter, ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.	0.460
gltB	wlbJK	BAV3291	BAV0091	Glutamate synthase [NADPH] large chain precursor.	Putative membrane protein.	0.712
glyQ	pitA	BAV0709	BAV0877	glycyl-tRNA synthetase alpha chain.	Low-affinity inorganic phosphate transporter.	0.450
lysS	pitA	BAV1517	BAV0877	lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.	Low-affinity inorganic phosphate transporter.	0.477
mogA	BAV0880	BAV0878	BAV0880	Molybdopterin biosynthesis protein.	Putative exported peptidase; Start codon not provided.	0.607
mogA	pitA	BAV0878	BAV0877	Molybdopterin biosynthesis protein.	Low-affinity inorganic phosphate transporter.	0.539
pitA	BAV0880	BAV0877	BAV0880	Low-affinity inorganic phosphate transporter.	Putative exported peptidase; Start codon not provided.	0.449