STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV0894IclR-family transcriptional regulator. (272 aa)    
Predicted Functional Partners:
BAV0211
IclR-family transcriptional regulator.
  
     0.750
BAV0567
IclR-family transcriptional regulator.
  
     0.720
BAV0041
IclR-family transcriptional regulator; Start codon not provided.
  
     0.634
BAV0525
GntR-family transcriptional regulator.
  
  
 0.540
purK
Phosphoribosylaminoimidazole carboxylase ATPase subunit; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).
       0.495
BAV0893
Conserved hypothetical protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.
       0.495
BAV0247
GntR-family transcriptional regulator.
  
  
 0.463
BAV3240
GntR-family transcriptional regulator.
  
    0.460
kipI
Histidine kinase inhibitor; Also similar to BAV3298 (28.6 38d).
  
    0.430
BAV3298
Conserved hypothetical protein; Also similar to BAV3096 (28.6 38d).
  
    0.430
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.