STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV0898Putative amino acid ABC transporter, permease component (pseudogene); Unassigned protein domain. (248 aa)    
Predicted Functional Partners:
aapM
L-amino acid ABC transporter, permease protein.
 
 0.979
aapQ
L-amino acid ABC transporter, permease protein.
 
 
 0.969
aapJ
L-amino acid ABC transporter, substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family.
 
 0.951
BAV0195
Amino acid-binding periplasmic protein; Belongs to the bacterial solute-binding protein 3 family.
 
 0.945
BAV1866
ABC transporter, permease protein.
 
 0.912
aapP
L-amino acid ABC transporter, ATP-binding protein.
  
  
 
0.901
glnP
Glutamine ABC transporter, permease protein; Start codon not provided.
 
 0.894
BAV0679
Amino acid ABC transporter, permease protein.
 
 0.876
BAV0680
Amino acid ABC transporter, permease protein.
 
 0.876
cydC
ABC transporter, ATP-binding protein.
 
     
0.871
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.