STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gcdHglutaryl-CoA dehydrogenase. (397 aa)    
Predicted Functional Partners:
BAV3222
enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.962
BAV3199
Putative enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.951
caiD
Carnitinyl-coa dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.950
paaJ
Beta-ketoadipyl CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.939
BAV2554
Putative beta-ketothiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.939
BAV0610
acyl-CoA dehydrogenase.
  
  
 
0.925
lpdA
Dihydrolipoamide dehydrogenase.
  
 0.923
BAV0226
acyl-CoA dehydrogenase.
  
  
 
0.919
BAV3021
acyl-CoA dehydrogenase.
  
  
 
0.918
sucB
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).
   
 0.910
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.