STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV0912Conserved hypothetical protein. (883 aa)    
Predicted Functional Partners:
BAV0913
Putative nuclease/helicase; Belongs to the helicase family. UvrD subfamily.
 
 
 0.999
BAV0399
Phage-related exonuclease; Also similar to the C-terminal region of Escherichia coli exodeoxyribonuclease VIII, recE; length 866 aa; id=37.4; ungapped id=41.1; E()=1.5e-25; 278 aa overlap; query 14-280 aa; subject 597-860 aa.
  
 
 0.866
BAV1425
Phage protein.
  
 
 0.866
BAV0691
Putative membrane protein.
  
     0.703
BAV0476
Putative exported protein.
  
     0.678
BAV0559
Putative exported protein.
  
     0.610
BAV0911
Putative transporter.
       0.610
BAV0911A
Hypothetical protein; Start codon not provided; No significant database matches.
       0.610
BAV2563
Putative exported protein; Start codon not provided.
 
     0.587
BAV1826
Putative membrane protein; No significant similarity outside the bordetellae.
  
     0.559
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.