STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAV0923ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily. (361 aa)    
Predicted Functional Partners:
BAV0924
ABC transporter, permease.
 
 0.988
BAV0925
ABC transporter, substrate-binding protein.
 
 
 0.945
BAV0102
ABC transporter, solute-binding protein.
 
 0.890
BAV1924
ABC transporter, permease protein.
 
 0.890
BAV1191
ABC transporter permease protein.
 
 0.882
potH
Putrescine ABC transporter, permease protein.
 
 
 0.880
potI
Putrescine ABC transporter, permease protein.
 
 
 0.862
BAV1923
ABC transporter, substrate-binding protein.
 
 
 0.851
BAV1193
ABC transporter, periplasmic binding protein.
  
 
 0.825
BAV0101
Putative solute-binding periplasmic component of ABC transporter.
  
 
 0.824
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.