STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV0925ABC transporter, substrate-binding protein. (440 aa)    
Predicted Functional Partners:
BAV0924
ABC transporter, permease.
 
  
 0.940
BAV1191
ABC transporter permease protein.
 
  
 0.834
BAV0923
ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  
 0.766
BAV0102
ABC transporter, solute-binding protein.
 
  
 0.596
BAV0926
Hypothetical protein; No significant database matches.
       0.548
gpmB
Probable phosphoglycerate mutase 2.
       0.547
BAV0922
LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
       0.543
phnX
2-phosphonoacetaldehyde hydrolase; Involved in phosphonate degradation; Belongs to the HAD-like hydrolase superfamily. PhnX family.
 
   
 0.507
BAV1190
ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  
 0.501
BAV1924
ABC transporter, permease protein.
 
  
 0.488
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.