STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV0946ABC transporter, substrate-binding protein. (401 aa)    
Predicted Functional Partners:
BAV0948
ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.956
BAV0947
ABC transporter, permease protein; Start codon not provided; Belongs to the binding-protein-dependent transport system permease family.
 
    0.955
BAV0949
ABC transporter, ATP-binding protein; Start codon not provided.
 
  
 0.940
BAV0956
Putative reductase flavoprotein subunit precursor; Start codon not provided; Also similar to BAV3254 (29.2 38d).
 
     0.931
BAV0955
Putative isochorismatase hydrolase; Start codon not provided.
 
     0.914
BAV0950
ABC transporter, ATP-binding protein.
 
    0.891
hyuB
Hydantoin utilization protein B.
 
     0.885
BAV0945
GntR-family transcriptional regulator.
 
     0.873
hyuA
Hydantoin utilization protein A.
 
     0.846
leuC1
3-isopropylmalate dehydratase large subunit.
 
    0.820
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.