STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hyuAHydantoin utilization protein A. (681 aa)    
Predicted Functional Partners:
hyuB
Hydantoin utilization protein B.
 0.999
hyuB-2
Hydantoin utilization protein B.
 0.998
hyuA-2
Hydantoin hydantoinase A.
  
  
 
0.915
BAV0955
Putative isochorismatase hydrolase; Start codon not provided.
 
     0.907
BAV0956
Putative reductase flavoprotein subunit precursor; Start codon not provided; Also similar to BAV3254 (29.2 38d).
 
     0.901
codA
Cytosine deaminase.
     
  0.900
BAV0946
ABC transporter, substrate-binding protein.
 
     0.846
BAV0945
GntR-family transcriptional regulator.
 
     0.796
BAV0948
ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
     0.794
BAV0947
ABC transporter, permease protein; Start codon not provided; Belongs to the binding-protein-dependent transport system permease family.
 
     0.791
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.