STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cydA1Cytochrome D ubiquinol oxidase subunit I; Start codon not provided; Also similar to BAV3111 (54.6 38d.). (525 aa)    
Predicted Functional Partners:
cydB1
Cytochrome d ubiquinol oxidase subunit II; Also similar to BAV3110 (44.3 38d.).
 
 0.998
cydB2
Cytochrome D ubiquinol oxidase subunit II; Also similar to BAV0992 (44.3 38d 0d.).
 0.995
BAV2785
Putative cytochrome oxidase D ubiquinol oxidase,subunit II.
 
 0.992
BAV3109
Putative exported protein.
 
 0.960
BAV2786
Putative cytochrome bd ubiquinol oxidase,subunit I.
  
  
 
0.927
cydA2
Cytochrome D ubiquinol oxidase subunit I; Also similar to BAV0991 (54.6 38d.).
  
  
 
0.903
cydD
ABC transporter, ATP-binding protein; Start codon not provided.
 
  
 0.887
BAV0993
Putative membrane protein; No significant database matches.
       0.766
cydC
ABC transporter, ATP-binding protein.
 
  
 0.724
BAV0994
Putative membrane protein; Start codon not provided.
 
     0.618
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.