STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
appDPutative oligopeptide ABC transporter,ATP-binding protein; Belongs to the ABC transporter superfamily. (355 aa)    
Predicted Functional Partners:
appC
Putative oligopeptide ABC transporter, permease protein.
  
 0.968
BAV1000
Putative oligopeptide ABC transporter, permease protein.
 
 
 0.935
BAV2197
ABC transporter permease protein.
  
 0.932
BAV1562
ABC transporter, permease protein.
  
 0.904
BAV1646
ABC transporter, permease protein.
  
 0.904
BAV3204
ABC transporter, permease protein.
  
 0.899
appF
Putative oligopeptide ABC transporter,ATP-binding protein; Belongs to the ABC transporter superfamily.
 
   
0.892
BAV2613
ABC transporter, permease protein.
  
 0.870
BAV1161
ABC transporter permease protein.
  
 0.865
BAV0499
Putative ABC transporter permease protein.
  
 0.844
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.