STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
appCPutative oligopeptide ABC transporter, permease protein. (298 aa)    
Predicted Functional Partners:
appD
Putative oligopeptide ABC transporter,ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 0.968
BAV1000
Putative oligopeptide ABC transporter, permease protein.
    0.953
appF
Putative oligopeptide ABC transporter,ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.949
BAV1001
Putative oligopeptide ABC transporter,oligopeptide-binding protein.
 
   0.896
BAV1561
ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 0.865
BAV3205
ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 0.849
BAV0500
Putative ABC transporter permease protein.
    0.840
BAV1645
ABC transporter, permease protein.
    0.839
BAV1160
ABC transporter permease protein.
    0.838
BAV2196
ABC transporter permease protein.
 
    0.833
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.