Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
appCPutative oligopeptide ABC transporter, permease protein. (298 aa)    
Predicted Functional Partners:
appD
Putative oligopeptide ABC transporter,ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.972
BAV1000
Putative oligopeptide ABC transporter, permease protein.
 
   0.961
appF
Putative oligopeptide ABC transporter,ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.955
BAV1001
Putative oligopeptide ABC transporter,oligopeptide-binding protein.
 
   0.905
BAV1561
ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.883
BAV0500
Putative ABC transporter permease protein.
 
   0.870
BAV1645
ABC transporter, permease protein.
 
   0.869
BAV3205
ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.869
BAV1160
ABC transporter permease protein.
 
   0.868
BAV2614
ABC transporter, permease protein.
 
   0.866
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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