STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV1001Putative oligopeptide ABC transporter,oligopeptide-binding protein. (526 aa)    
Predicted Functional Partners:
BAV1000
Putative oligopeptide ABC transporter, permease protein.
 
   0.918
appC
Putative oligopeptide ABC transporter, permease protein.
 
   0.905
BAV1002
Putative peptidase; Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC); Belongs to the peptidase M81 family.
 
     0.850
BAV0499
Putative ABC transporter permease protein.
 
   0.770
BAV0500
Putative ABC transporter permease protein.
 
   0.740
appF
Putative oligopeptide ABC transporter,ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 
 0.727
appD
Putative oligopeptide ABC transporter,ATP-binding protein; Belongs to the ABC transporter superfamily.
  
   0.708
BAV1539
Conserved hypothetical protein; Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC); Belongs to the peptidase M81 family.
 
     0.700
BAV0502
Conserved hypothetical protein; Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC); Belongs to the peptidase M81 family.
 
     0.694
BAV1562
ABC transporter, permease protein.
  
   0.646
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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