STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAV1003Putative signaling protein. (429 aa)    
Predicted Functional Partners:
BAV1874
Putative response regulator.
 
 0.994
wlbJK
Putative membrane protein.
  
 
 0.974
rtn
Putative signaling protein.
 
 0.955
BAV2274
Putative signaling protein; Start codon not provided; Similar to the C_terminal region of many CDSs including Pseudomonas aeruginosa hypothetical signaling protein pa1727 SWALL:YH27_PSEAE (SWALL:Q9I310) (685 aa) fasta scores: E(): 5e-46, 35.98 38d in 453 aa.
 
 0.937
bvgS
Virulence sensor protein; Start codon not provided.
 
 
 0.933
BAV1869
Putative signaling protein; Start codon not provided.
 
   
 0.919
BAV0352
Putative signaling protein.
 
 0.859
BAV1934
Putative signaling protein.
 
 
 0.858
BAV1542
Putative signaling protein.
 
 0.856
BAV2324
Putative metal-dependent phosphohydrolase.
 
 0.807
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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