STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV1013Putative X-Pro dipeptidase. (489 aa)    
Predicted Functional Partners:
hutG
Putative N-formylglutamate amidohydrolase.
  
  
 0.725
BAV0895
Putative agmatinase/arginase; Belongs to the arginase family.
  
  
 0.634
BAV0674
N-carbamoyl-D-amino acid hydrolase.
  
   
 0.552
BAV1012
Putative exported protein.
       0.506
BAV1009
Putative component of efflux pump.
 
     0.464
BAV1010
Putative HlyD-family component of efflux pump.
 
     0.432
BAV0682
Hydantoin racemase.
  
     0.430
gltB
Glutamate synthase [NADPH] large chain precursor.
     
 0.407
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.