STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
risSTwo component system sensor kinase. (480 aa)    
Predicted Functional Partners:
risA
Two component system response regulator.
 
 0.997
wlbJK
Putative membrane protein.
  
 
 0.976
ompR
Osmolarity two component response regulator.
 
 0.974
ompB
Osmolarity two component sensor kinase.
  
  
 
0.905
lpdA
Dihydrolipoamide dehydrogenase.
    
 0.731
BAV0018
Probable two-component response regulator.
 
 
 0.722
gspN
General secretion pathway protein N.
  
     0.695
BAV2310
Two-component system response regulator.
 
 
 0.676
ahpC
Alkyl hydroperoxide reductase.
   
 
 0.674
phoB
Phosphate regulon two-component response regulator.
 
 
 0.669
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.