STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV1077ABC transporter ATP-binding protein. (225 aa)    
Predicted Functional Partners:
BAV1078
Putative cobalt ABC transporter, permease protein.
 
 0.999
BAV1079
BioY-family membrane protein.
 
 
 0.997
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.618
msrB
Peptide methionine sulfoxide reductase; Belongs to the MsrB Met sulfoxide reductase family.
       0.567
ispZ
Probable intracellular septation protein; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.
       0.563
BAV1074
BolA-like protein; Also similar to BAV3311 (37.6 38d); Belongs to the BolA/IbaG family.
       0.560
BAV1138
Putative permease.
     
  0.540
ugpC
Sn-glycerol-3-phosphate ABC transporter,ATP-binding protein; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family.
     
 
0.540
proW
Glycine betaine/L-proline ABC transporter,permease protein.
     
  0.540
BAV3006
Putative permease.
     
  0.540
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.