STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAV1088ABC transporter, substrate-binding protein. (404 aa)    
Predicted Functional Partners:
BAV1089
ABC transporter ATP-binding protein.
 
    0.987
BAV1086
ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
    0.979
BAV1087
ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
    0.976
BAV1090
ABC transporter ATP-binding protein.
 
    0.957
BAV0485
Putative branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.656
BAV1082
Putative branched-chain amino acid ABC transporter ATP-binding/permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.656
BAV1272
ABC tranpsorter, ATP binding/permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.656
BAV0979
ABC transporter atp-binding protein.
  
  
 0.538
BAV0980
High-affinity branched-chain amino acid transport ATP-binding protein BraF.
  
  
 0.538
BAV2487
Putative exported protein.
  
     0.473
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.