Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rpoERNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily. (199 aa)    
Predicted Functional Partners:
rseB
sigma-E factor regulatory protein.
 
 
 0.949
rseA
sigma-E factor negative regulatory protein.
  
 
 0.934
fabF
3-oxoacyl-[acyl-carrier-protein] synthase II; Start codon not provided; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
     
 0.816
BAV1124
Hypothetical protein; No significant database matches.
       0.780
BAV0806
Putative ECF sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.771
mucD
Serine protease; Belongs to the peptidase S1C family.
     
 0.685
hfq
HfQ protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family.
 
   
 0.609
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
     
 0.593
BAV0807
Transmembrane regulator.
  
 
 0.561
recO
DNA repair protein; Involved in DNA repair and RecF pathway recombination.
 
    0.558
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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