STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpoERNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily. (199 aa)    
Predicted Functional Partners:
rseB
sigma-E factor regulatory protein.
 
 
 0.950
rseA
sigma-E factor negative regulatory protein.
  
 
 0.942
fabF
3-oxoacyl-[acyl-carrier-protein] synthase II; Start codon not provided; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
     
 0.817
BAV1124
Hypothetical protein; No significant database matches.
       0.782
BAV0806
Putative ECF sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.757
mucD
Serine protease; Belongs to the peptidase S1C family.
  
  
 0.728
rpoA
DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.654
slyA
MarR-family transcriptional regulator.
  
  
 0.636
hfq
HfQ protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family.
 
   
 0.635
BAV0807
Transmembrane regulator.
  
 
 0.610
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.