STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rseAsigma-E factor negative regulatory protein. (161 aa)    
Predicted Functional Partners:
rseB
sigma-E factor regulatory protein.
 
 
 0.998
rpoE
RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.934
mucD
Serine protease; Belongs to the peptidase S1C family.
  
 
 0.907
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
     
 0.809
fabF
3-oxoacyl-[acyl-carrier-protein] synthase II; Start codon not provided; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
     
 0.798
BAV0851
Putative membrane protein.
  
    0.765
BAV0691
Putative membrane protein.
  
     0.761
BAV0861
Putative ribonuclease inhibitor.
  
     0.755
BAV1124
Hypothetical protein; No significant database matches.
       0.752
BAV0540
Putative membrane protein; No significant database matches. Seems to be unique to the Bordetellae.
  
     0.745
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.