STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV1161ABC transporter permease protein. (297 aa)    
Predicted Functional Partners:
BAV1160
ABC transporter permease protein.
 
  0.995
BAV1159
ABC transporter substrate-binding protein.
  0.991
BAV1158
ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.963
appD
Putative oligopeptide ABC transporter,ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 0.865
BAV3205
ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 0.847
BAV1645
ABC transporter, permease protein.
    0.838
BAV1000
Putative oligopeptide ABC transporter, permease protein.
    0.837
BAV0500
Putative ABC transporter permease protein.
    0.835
BAV1561
ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 0.835
BAV1849
ABC transporter, permease protein.
 
    0.830
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.