STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dppAD-aminopeptidase. (272 aa)    
Predicted Functional Partners:
dmpA
D-aminopeptidase; Start codon not provided.
 
   
 0.954
BAV1156
RpiR-family transcriptional regulator.
 
     0.757
BAV1161
ABC transporter permease protein.
 
    0.757
BAV1159
ABC transporter substrate-binding protein.
 
     0.751
BAV1164
Aminopeptidase P.
       0.743
BAV1160
ABC transporter permease protein.
 
    0.741
BAV1157
L-asparaginase.
 
     0.546
BAV1158
ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
     0.488
ldcA
Muramoyltetrapeptide carboxypeptidase.
 
    0.451
pyrG
CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.
       0.416
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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