STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV1164Aminopeptidase P. (598 aa)    
Predicted Functional Partners:
dppA
D-aminopeptidase.
       0.745
dmpA
D-aminopeptidase; Start codon not provided.
  
    0.728
BAV1161
ABC transporter permease protein.
  
  
 0.617
BAV1160
ABC transporter permease protein.
     
 0.600
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
   
 
 0.513
BAV1159
ABC transporter substrate-binding protein.
  
    0.509
hemB
Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
  
  
 0.498
BAV2899
Conserved hypothetical protein.
     
 0.482
pyrG
CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.
     
 0.477
mgsA
Putative methylglyoxal synthase; Similar over its C-terminal region to many methylglyoxal synthases including Escherichia coli,Escherichia coli O157:H7, and Shigella flexneri methylglyoxal synthase mgsA SWALL:MGSA_ECOLI (SWALL:P37066) (152 aa) fasta scores: E(): 0.03, 32.57 38d in 132 aa.
      
 0.448
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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