STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAV1168Putative exported protein; Seems to be unique to the bordetellae. No significant database matches to other organisms. (217 aa)    
Predicted Functional Partners:
BAV2287
Putative pilus assembly protein.
  
  
 0.703
BAV2531
Putative type IV pilus assembly protein (pseudogene); Unassigned protein domain.
  
  
 0.653
hslO
Chaperonin; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress; Belongs to the HSP33 family.
       0.618
BAV2285
Putative pilus assembly protein.
  
  
 0.608
BAV1170
Putative transferase.
       0.528
BAV1171
Putative acetyl-CoA synthetase.
       0.520
BAV2283
Putative pilus assembly protein.
  
    0.475
BAV2284
Putative pilus assembly protein.
  
  
 0.470
BAV2528
Putative type IV pilus assembly protein.
  
  
 0.470
BAV2534
Putative pilin subunit.
  
  
 0.407
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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