STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV1177Putative membrane protein. (142 aa)    
Predicted Functional Partners:
hemF
Coproporphyrinogen III oxidase, aerobic; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX.
 
  
 0.931
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
 
  
 0.929
hemN
Oxygen-independent coproporphyrinogen III oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
  
 0.924
BAV3053
Putative membrane protein; Start codon not provided.
     
  0.900
BAV1176
Putative methylase; Belongs to the methyltransferase superfamily.
       0.817
hemB
Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
 
   
 0.562
BAV0134
Conserved hypothetical protein.
 
     0.530
prpC
2-methylcitrate synthase; Belongs to the citrate synthase family.
       0.497
BAV3192
Putative cytochrome C; Truncated at N-terminus relative its orthologue in B. bronchiseptica.
  
     0.463
petC
Cytochrome C.
  
     0.410
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.