STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
piuCPutative iron-uptake factor (PkhD-type hydroxylase). (227 aa)    
Predicted Functional Partners:
piuA
Hydroxamate-type ferrisiderophore receptor.
 
  
 0.981
bfrB
Putative ferric siderophore receptor.
 
  
 0.746
BAV0634
Ferric-siderophore receptor.
 
  
 0.550
BAV1195
Putative membrane protein.
       0.535
BAV1198
Putative membrane protein (partial); Similar to C-terminal regions of several CDSs.
       0.453
hurR
Heme uptake transmembrane sensor.
  
    0.409
fecR
Regulator of iron dicitrate transport; Start codon not provided.
  
    0.407
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.