STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV1211Putative membrane protein. (539 aa)    
Predicted Functional Partners:
BAV1210
Putative membrane protein; Start codon not provided.
 
    0.959
BAV1212
Putative membrane protein.
 
    0.947
bfrB
Putative ferric siderophore receptor.
 
  
 0.714
bfrH
TonB-dependent siderophore receptor; Start codon not provided.
 
   
 0.695
BAV0634
Ferric-siderophore receptor.
 
  
 0.603
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.573
fecR-2
Transmembrane sensor protein.
 
   
 0.562
fecI-2
RNA polymerase ECF-family sigma factor; Start codon not provided; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.478
BAV0152
TonB-dependent receptor protein.
 
  
 0.445
BAV2950
Conserved hypothetical protein.
  
     0.440
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.