STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV1212Putative membrane protein. (109 aa)    
Predicted Functional Partners:
BAV1210
Putative membrane protein; Start codon not provided.
 
    0.995
fecR-2
Transmembrane sensor protein.
 
    0.969
bfrH
TonB-dependent siderophore receptor; Start codon not provided.
 
    0.966
fecI-2
RNA polymerase ECF-family sigma factor; Start codon not provided; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.947
BAV1211
Putative membrane protein.
 
    0.947
BAV0633
Putative membrane protein.
 
    0.792
hurR
Heme uptake transmembrane sensor.
 
    0.639
BAV2850
Putative iron transport sensor protein.
 
    0.623
BAV3335
Putative membrane protein.
  
     0.602
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.572
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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