STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phbBacetoacetyl-CoA reductase (short-chain dehydrogenase/reductase); Belongs to the short-chain dehydrogenases/reductases (SDR) family. (245 aa)    
Predicted Functional Partners:
phbC
Poly-beta-hydroxybutyrate polymerase; Start codon not provided.
 
 
 0.982
phbB-2
acetoacetyl-CoA reductase; Start codon not provided; Similar to N-terminal half of Escherichia coli probable 3-hydroxybutyryl-coa dehydrogenase paaH SWALL:PAAH_ECOLI (SWALL:P76083) (475 aa) fasta scores: E(): 5.4e-15, 30.79 38d in 328 aa.
  
 0.924
dcaH
hydroxyacyl-CoA dehydrogenase.
   
 0.910
BAV0216
Putative 3-hydroxybutyryl-CoA dehydrogenase.
   
 0.908
BAV0312
3-hydroxybutyryl-CoA dehydrogenase.
   
 0.908
lpsJ
succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B.
  
 0.908
BAV2476
acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.908
BAV3370
acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.908
lpsI
succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A.
  
 
 0.902
phbF
Putative regulator of Poly-beta-hydroxybutyrate (PHB) biosynthesis.
 
   
 0.840
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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