STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phbFPutative regulator of Poly-beta-hydroxybutyrate (PHB) biosynthesis. (187 aa)    
Predicted Functional Partners:
phbC
Poly-beta-hydroxybutyrate polymerase; Start codon not provided.
 
   
 0.919
phbB
acetoacetyl-CoA reductase (short-chain dehydrogenase/reductase); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
   
 0.824
phaP
Granule-associated protein (phasin).
 
   
 0.676
phaZ
Poly-beta-hydroxybutyrate (PHB) depolymerase.
 
   
 0.582
BAV1224
Putative exported protein.
 
     0.538
BAV1227
Putative membrane protein.
 
     0.477
BAV1225
Putative exported protein.
       0.461
BAV1226
Putative permease.
       0.453
BAV1662
Two-component sensor kinase.
  
     0.436
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.