STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV1226Putative permease. (278 aa)    
Predicted Functional Partners:
BAV1224
Putative exported protein.
 
  
 0.984
BAV1227
Putative membrane protein.
 
    0.982
BAV1225
Putative exported protein.
 
   
 0.954
BAV1228
Conserved hypotheticals protein.
  
    0.589
piuA
Hydroxamate-type ferrisiderophore receptor.
   
  
 0.564
macB
Putative macrolide-specific ABC-type efflux carrier; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
   
 0.512
actP
Copper-transporting P-type ATPase.
     
 0.493
BAV0191
Putative transferrin/hemoglobin-binding protein.
   
  
 0.467
bhuR
Outer membrane TonB-dependent heme receptor.
   
  
 0.467
phbF
Putative regulator of Poly-beta-hydroxybutyrate (PHB) biosynthesis.
       0.453
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.