STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV1227Putative membrane protein. (453 aa)    
Predicted Functional Partners:
BAV1226
Putative permease.
 
    0.982
BAV1224
Putative exported protein.
 
  
 0.964
BAV1225
Putative exported protein.
 
  
 0.945
BAV1228
Conserved hypotheticals protein.
  
    0.622
actP
Copper-transporting P-type ATPase.
  
  
 0.480
wlbJK
Putative membrane protein.
     
 0.479
phbF
Putative regulator of Poly-beta-hydroxybutyrate (PHB) biosynthesis.
 
     0.477
bfd
Bacterioferritin-associated ferredoxin.
  
   
 0.455
BAV0562
Ferredoxin.
  
 
 0.439
nuoI
NADH dehydrogenase I chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
  
 
 0.439
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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