STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAV1231Conserved hypothetical protein; Belongs to the UPF0337 (CsbD) family. (66 aa)    
Predicted Functional Partners:
BAV1230
Putative membrane protein.
 
  
 0.991
BAV1229
Putative exported protein.
 
    0.954
BAV2161
Adhesin (pseudogene); Unassigned protein domain.
   
    0.938
BAV2052
Putative lipoprotein.
  
    0.889
vrg-6
Putative Virulence protein.
  
  
 0.721
BAV2639
Putative capsular polysaccharide export protein; Start codon not provided.
   
    0.649
BAV3086
Putative O-antigen export ABC transporter,ATP-binding protein.
  
    0.577
BAV3164
Putative transport lipoprotein.
  
    0.566
BAV0850
Putative membrane protein.
  
  
 0.470
ohr
Organic hydroperoxide resistance protein.
  
  
 0.442
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.