STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV1234ABC transporter, permease and ATP-binding protein. (760 aa)    
Predicted Functional Partners:
BAV1235
Conserved hypothetical protein.
 
     0.962
cphA2
Cyanophycin synthetase; Also similar to BAV1232, 45.316 38dentity (46.292 ungapped) in 854 aa overlap.
 
     0.855
cphA1
Cyanophycin synthetase; Also similar to BAV1233, 45.316 38dentity (46.292 ungapped) in 854 aa overlap; Belongs to the MurCDEF family.
 
     0.844
BAV1790
Putative cointegrate resolution protein.
  
 
 0.500
wlbJK
Putative membrane protein.
  
 
 0.472
nrdA
Ribonucleoside-diphosphate reductase alpha chain; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
 
   
 0.471
BAV1814
ABC transporter ATP-binding protein.
  
0.461
BAV1618
Conserved hypothetical protein.
  
   0.460
dnaK
Chaperone protein; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.447
slyX
Protein SlyX.
  
     0.437
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.