STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV1250Putative sugar epimerase/dehydratase; Start codon not provided. (355 aa)    
Predicted Functional Partners:
BAV1246
Glycosyl transferase.
 
  
 0.871
BAV1252
Putative O antigen biosynthesis sulfotransferase; No significant database matches.
 
     0.813
BAV1248
Putative transketolase C-terminal part.
 
     0.805
BAV1249
Putative transketolase N-terminal part.
       0.778
BAV1247
Putative O antigen biosynthesis protein.
       0.777
BAV1251
Putative O antigen biosynthesis protein; Start codon not provided.
       0.773
BAV1253
Hypothetical protein; No significant database matches.
       0.773
rfbF
Glucose-1-phosphate cytidylyltransferase.
 
 
 0.722
rfbA
Glucose-1-phosphate thymidylyltransferase 1; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
 
  
 0.718
rfbG
CDP-glucose 4,6-dehydratase.
 
     0.713
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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