STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hpaG-2Putative 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; Start codon not provided; Similar to the N-terminal half of Escherichia coli 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase [includes: 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase HpaG SWALL:HPAG_ECOLI (SWALL:Q46978) (429 aa) fasta scores: E(): 1.5e-22, 36.71 38d in 207 aa. (268 aa)    
Predicted Functional Partners:
hpaF
5-carboxymethyl-2-hydroxymuconate delta-isomerase.
 
 
 0.985
hpaG
Putative 5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioate decarboxylase; Similar to the C-terminal half of Escherichia coli 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase [includes: 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase hpaG SWALL:HPAG_ECOLI (SWALL:Q46978) (429 aa) fasta scores: E(): 1.6e-44, 58.85 38d in 209 aa.
 
  
 
0.981
hpaH-2
2-oxo-hept-3-ene-1,7-dioate hydratase.
  
 
 0.980
hpaH
2-oxo-hept-3-ene-1,7-dioate hydratase.
  
 
 0.919
hpaI-2
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; Belongs to the HpcH/HpaI aldolase family.
  
  
 0.740
hpaE
5-carboxy-2-hydroxymuconate semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
   0.668
BAV1267
Putative endoribonuclease; Also similar to BAV1268, BAV1921, BAV0553, BAV1913,BAV3018 and BAV1097.
  
    0.578
BAV1268
Putative endoribonuclease; Also similar to BAV1267, BAV1921, BAV0553, BAV1913,BAV3018 and BAV1097.
  
    0.578
BAV1526
Putative membrane protein.
  
    0.548
citB
Citrate utilization protein B.
   
    0.531
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.