STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV1280Putative phage integrase; Belongs to the 'phage' integrase family. (415 aa)    
Predicted Functional Partners:
BAV1284
Putative phage methyltransferase.
 
  
 0.787
BAV1281
Phage excisionase.
       0.781
BAV1283
Putative phage methyltransferase.
  
  
 0.708
BAV1282
Putative phage protein; No significant database matches.
       0.675
BAV1285
Putative phage protein.
       0.675
BAV1286
Putative phage protein; No significant database matches.
       0.675
rdgC-3
Putative phage recombinase; May be involved in recombination; Belongs to the RdgC family.
       0.675
BAV0388
Hypothetical protein.
  
     0.564
BAV0236
Putative phosphoribosyl transferase.
   
    0.537
pagP
Lipid A palmitoyl transferase; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors.
  
     0.534
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.