STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV1312Putative phage DNA-binding protein. (108 aa)    
Predicted Functional Partners:
BAV1312A
Putative phage protein.
 
   
 0.949
BAV1313
Putative phage small subunit terminase.
       0.557
BAV1314
Putative phage large subunit terminase; Start codon not provided.
       0.557
BAV1315
Putative phage portal protein.
       0.557
BAV1316
Putative phage head protein.
       0.557
BAV1317
Phage protein.
       0.557
BAV1318
Phage structural protein; No significant database matches;encodes major structural protein, as shown by N-terminal sequencing of purified protein in L. Temple's lab.
       0.557
BAV1319
Putative phage protein.
       0.530
BAV2717
Putative thioredoxin.
  
     0.476
BAV1557
Conserved hypothetical protein.
  
     0.453
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.