STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV1329Putative phage tail tape-measure protein. (537 aa)    
Predicted Functional Partners:
BAV1333
Putative phage baseplate protein.
 
  
 0.967
BAV1335
Phage protein.
 
     0.953
BAV1322
Phage protein.
 
    0.910
BAV1325
Putative phage protein.
 
     0.855
BAV1316
Putative phage head protein.
 
     0.831
BAV1317
Phage protein.
 
     0.831
BAV1315
Putative phage portal protein.
 
     0.824
BAV1336
Phage protein.
     
 0.792
BAV1337
N-terminus similar to phage tail proteins, such as Burkholderia cenocepacia phage BcepB1A putative tail fiber protein; C-terminus similar to glycine-rich proteins, such as Epstein-Barr virus; ebna-1 nuclear protein; bkrf1 and Mycobacterium tuberculosis H37Rv; pe-pgrs family protein; pe_pgrs13.
     
 0.792
BAV1330
Putative phage protein; No significant database matches.
       0.779
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.