Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| BAV0693 | gph | BAV0693 | BAV1344 | Conserved hypothetical protein. | Phosphoglycolate phosphatase. | 0.923 |
| BAV1110 | gph | BAV1110 | BAV1344 | Probable hydrolase. | Phosphoglycolate phosphatase. | 0.575 |
| BAV1110 | purL | BAV1110 | BAV1546 | Probable hydrolase. | Phosphoribosylformylglycinamidine synthase; Start codon not provided; In the N-terminal section; belongs to the FGAMS family. | 0.463 |
| BAV1343 | gph | BAV1343 | BAV1344 | Probable transpoter. | Phosphoglycolate phosphatase. | 0.517 |
| BAV1343 | ubiG | BAV1343 | BAV1345 | Probable transpoter. | 3-demethylubiquinone-9 3-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family. | 0.442 |
| gph | BAV0693 | BAV1344 | BAV0693 | Phosphoglycolate phosphatase. | Conserved hypothetical protein. | 0.923 |
| gph | BAV1110 | BAV1344 | BAV1110 | Phosphoglycolate phosphatase. | Probable hydrolase. | 0.575 |
| gph | BAV1343 | BAV1344 | BAV1343 | Phosphoglycolate phosphatase. | Probable transpoter. | 0.517 |
| gph | gyrA | BAV1344 | BAV1347 | Phosphoglycolate phosphatase. | DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.699 |
| gph | lepB | BAV1344 | BAV1130 | Phosphoglycolate phosphatase. | Signal peptidase I; Belongs to the peptidase S26 family. | 0.598 |
| gph | lspA | BAV1344 | BAV1410 | Phosphoglycolate phosphatase. | Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family. | 0.617 |
| gph | ompA | BAV1344 | BAV1346 | Phosphoglycolate phosphatase. | Previously sequenced as Bordetella avium outer membrane protein a precursor ompA SWALL:OMPA_BORAV (SWALL:Q05146) (194 aa) fasta scores: E(): 1.7e-71, 100 id in 194 aa. | 0.839 |
| gph | purL | BAV1344 | BAV1546 | Phosphoglycolate phosphatase. | Phosphoribosylformylglycinamidine synthase; Start codon not provided; In the N-terminal section; belongs to the FGAMS family. | 0.463 |
| gph | rpe | BAV1344 | BAV3233 | Phosphoglycolate phosphatase. | Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. | 0.469 |
| gph | ubiG | BAV1344 | BAV1345 | Phosphoglycolate phosphatase. | 3-demethylubiquinone-9 3-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family. | 0.946 |
| gyrA | gph | BAV1347 | BAV1344 | DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | Phosphoglycolate phosphatase. | 0.699 |
| gyrA | lepB | BAV1347 | BAV1130 | DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | Signal peptidase I; Belongs to the peptidase S26 family. | 0.644 |
| gyrA | lspA | BAV1347 | BAV1410 | DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family. | 0.535 |
| gyrA | ompA | BAV1347 | BAV1346 | DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | Previously sequenced as Bordetella avium outer membrane protein a precursor ompA SWALL:OMPA_BORAV (SWALL:Q05146) (194 aa) fasta scores: E(): 1.7e-71, 100 id in 194 aa. | 0.739 |
| gyrA | ubiG | BAV1347 | BAV1345 | DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 3-demethylubiquinone-9 3-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family. | 0.731 |
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