STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
paaBPhenylacetic acid degradation protein. (94 aa)    
Predicted Functional Partners:
paaA
Phenylacetic acid degradation protein.
 
 0.999
paaC
Phenylacetic acid degradation protein.
 
 0.999
paaD
Phenylacetic acid degradation protein; Start codon not provided.
 
 
 0.998
paaE
Probable phenylacetic acid degradation NADH oxidoreductase.
 
 
 0.997
paaI
Phenylacetic acid degradation protein.
 
 
 0.994
paaG
Probable enoyl-CoA hydratase.
 
 
 0.982
paaK-2
Phenylacetate-coenzyme A ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
 
 
 0.974
paaX
Phenylacetic acid degradation operon negative regulatory protein.
 
   
 0.800
paaZ
Putative phenylacetic acid degradation aldehyde dehydrogenase.
 
  
 0.679
dcaH
hydroxyacyl-CoA dehydrogenase.
  
  
 0.507
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.