STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
paaDPhenylacetic acid degradation protein; Start codon not provided. (166 aa)    
Predicted Functional Partners:
paaC
Phenylacetic acid degradation protein.
 
 
 0.999
paaA
Phenylacetic acid degradation protein.
 
 
 0.998
paaB
Phenylacetic acid degradation protein.
 
 
 0.998
paaE
Probable phenylacetic acid degradation NADH oxidoreductase.
 
 
 0.997
paaI
Phenylacetic acid degradation protein.
 
 
 0.994
paaG
Probable enoyl-CoA hydratase.
 
 
 0.988
paaK-2
Phenylacetate-coenzyme A ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
 
  
 0.975
iscU
[Fe-S] cluster formation/repair protein; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
  
  
 0.834
paaX
Phenylacetic acid degradation operon negative regulatory protein.
 
   
 0.827
paaZ
Putative phenylacetic acid degradation aldehyde dehydrogenase.
 
  
 0.712
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.