STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
paaEProbable phenylacetic acid degradation NADH oxidoreductase. (362 aa)    
Predicted Functional Partners:
paaB
Phenylacetic acid degradation protein.
 
 
 0.997
paaC
Phenylacetic acid degradation protein.
 
 0.997
paaD
Phenylacetic acid degradation protein; Start codon not provided.
 
 
 0.997
paaA
Phenylacetic acid degradation protein.
 
 0.995
paaI
Phenylacetic acid degradation protein.
 
 
 0.992
paaG
Probable enoyl-CoA hydratase.
 
 
 0.977
paaK-2
Phenylacetate-coenzyme A ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
 
 
 0.966
iscU
[Fe-S] cluster formation/repair protein; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
  
 0.823
BAV2180
Putative dioxygenase.
  
  
 0.782
paaX
Phenylacetic acid degradation operon negative regulatory protein.
 
   
 0.753
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.