STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
paaZPutative phenylacetic acid degradation aldehyde dehydrogenase. (554 aa)    
Predicted Functional Partners:
paaG
Probable enoyl-CoA hydratase.
 
 0.868
paaI
Phenylacetic acid degradation protein.
 
   
 0.854
paaK-2
Phenylacetate-coenzyme A ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
 
 
 
 0.755
paaE
Probable phenylacetic acid degradation NADH oxidoreductase.
 
  
 0.718
paaD
Phenylacetic acid degradation protein; Start codon not provided.
 
  
 0.712
paaC
Phenylacetic acid degradation protein.
 
  
 0.707
paaB
Phenylacetic acid degradation protein.
 
  
 0.679
BAV0331
Putative type IV prepilin leader peptidase; Belongs to the peptidase A24 family.
      
 0.618
paaA
Phenylacetic acid degradation protein.
 
  
 0.607
paaX
Phenylacetic acid degradation operon negative regulatory protein.
 
   
 0.587
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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